PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242297
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 514aa    MW: 58755.5 Da    PI: 6.8348
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242297genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM371.1e-11321688128
            NAM   8 hPtdeelvveyLkkkvegkkleleev...ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkd 89 
                    +P+d+el+ ++L++ ++g++ +  +    i+  +  ++ P++L     ++ +++y ++  ++     + + r               g W ++ ++
  MDP0000242297  32 EPSDQELILYFLNRWINGQPQPS-QLvaqIDVDEFRSLTPEQLC----NDLQQLYLYTAIERGPGGHDLPDRRvyigqdpldrnRILGWWISKVSK 122
                    6*******************666.430225555677889****6....3457899999998887765555553366666666544479******** PP

            NAM  90 kevlskkgel......vglkktLvfykg.rapkgektdWvmheyrl 128
                    k++l  ++ +      +g kk  vf+ g ++++++ t+W m ey+ 
  MDP0000242297 123 KNILGINTDDpklqisIGYKKPYVFHIGnKRKDAVVTHWHMIEYTT 168
                    ***9874333556667**********874667789*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.77125192IPR003441NAC domain
SuperFamilySSF1019418.5E-1432191IPR003441NAC domain
PfamPF023652.2E-732167IPR003441NAC domain
PfamPF030171.5E-5240297IPR004264Transposase, Tnp1/En/Spm-like
SuperFamilySSF540015.49E-10365505No hitNo description
Gene3DG3DSA:3.30.310.1307.3E-4443488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSAPPPDVPE HLVRDGDMHQ LLNDIRDRVI DEPSDQELIL YFLNRWINGQ PQPSQLVAQI  60
DVDEFRSLTP EQLCNDLQQL YLYTAIERGP GGHDLPDRRV YIGQDPLDRN RILGWWISKV  120
SKKNILGINT DDPKLQISIG YKKPYVFHIG NKRKDAVVTH WHMIEYTTEP DHSNSKGSGI  180
LYNWSLKKIY LGKKKSTRQR RGSNNVQADE CHDGSCPINA PRDPTIPADA DLALDFDEFN  240
NKKAVACGQI LTLGSNTIHN VSLGEGNVRV AINLALDEDA LLPIPVRGEM RTVGDAVKSI  300
VAWPRDLVIM LKKGVKEKQV TKERTLKGKS FKAVQDNQPQ SWKDLEDHTN NKMHDDLVFX  360
FSTEDQAFGH SRTVYLARQC ILDLIGMQQL EQEVIVAYMS HLYEQYKHST TIEEVRFVDP  420
ADVCKTRNKG DPLIQERADR LTLRLMQVTS SSIFLIPYNP TNHWFLTIIS QSKDIVYVMN  480
SINNWPLDKD WKNVINTGIK GYNEQTGRQH KVPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-08NAC domain containing protein 3